Maeve's missing piece of brain changes her personality and makes her unstable. She becomes much more violent, sensitive, apathetic, and she sees and hears things other people don't see. She creates special lenses that help her see even more things and it freaks Claire out.
Maeve continues to have that lisp she had in that one comic. The nerves in her face never fully healed.
She's blind in one eye, and the never fixes her goggles. Claire begs Maeve to fix her goggles and to wear better safety equipment, but Maeve's excuse is "There's nothing there to protect."
Maeve uses a cane now. She can't walk on her own after Vincent used bone and tissue from her leg to fix her head.
Transformers: Eclipsed never had a solid plot or ending planned out, but here's what I did have planned:
Knockout abandones Skidlock on the "autobot" cargo ship (they are factionless) and Skidlock is forced to pretend he's not a decepticon by changing his head shape, eye color, and not sounding like great grandma who's been smoking two packs of cigarettes every day of her life. He had to pretend he wasn't there to steal from them and also kill them if he had to.
This comic had it's own version of claire. This Claire was small, intelligent and creepy. She hid on top of the pipes along the ceiling of the ship, and manipulated Skidlock into doing things for her, blackmailing him and his secret identity.
Hubert isn't normal. He cannot transform, or at least, he's not supposed to. Attempting to transform into his hovering tuk tuk vehicle mode causes him to bend his metal panels in unhealthy ways and bleed. It's like he springlocks himself with his own body, crushing and stabbing things inside. Transforming for him is not painless and safe like it is for everyone else.
Maeve makes a lot of weird prosthetic arms, creating exposed nerve endings and connecting them to her prosthetic arms. One of the arms Maeve was going to make was a flamethrower arm